Cghregions
WebUsing multiple testing corrections suitable for these data, we provide statistical evidence for genomic differences on several clone regions between MSI+ and CIN+ tumors. The algorithm, named CGHregions, is available as an easy-to-use script in R. Webplot.cghRegions Create a plot displaying chromosomes on the Y-axis and base pair position on the X-axis. A new region is displayed by a slight jump with respect to the previous region. Each region is displayed as a bi-colored segment, the lower and upper part of which correspond to
Cghregions
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WebUsing multiple testing corrections suitable for these data, we provide statistical evidence for genomic differences on several clone regions between MSI+ and CIN+ tumors. The algorithm, named CGHregions, is available as an easy-to …
WebNov 8, 2024 · CGHregions takes as input array CGH data (log2-ratios) that have been segmented (i.e., split into chromosomal segments of similar log2-ratios) and called (i.e., … WebCGHregions takes as input array CGH data (log2-ratios) that have been segmented (i.e., split into chromosomal segments of similar log2-ratios) and called (i.e., a copy number …
WebFeb 1, 2007 · An algorithm to reduce multi-sample array CGH data from thousands of clones to tens or hundreds of clone regions is introduced. This reduction of the data is … WebNov 8, 2024 · avedist: Retrieve regions information from cghRegions object. CGHbase-package: CGHbase: Base functions and classes for arrayCGH data... chromosomes: Retrieve feature position data from cgh objects. class.cghCall: Class to contain and describe called array comparative... class.cghRaw: Class to contain and describe raw or …
WebDimension Reduction for Array CGH Data with Minimal Information Loss
WebContainer for aCGH regions data and experimental metadata. cghRegions class is derived from eSet , and requires a matrix named regions as assayData member. Furthermore, columns named Chromosome, Start, End, Nclone, and Avedist are required as featureData … force bar s1pWebNov 8, 2024 · In CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss. Description Usage Arguments Details Value Author(s) References … elizabeth blackwell was the first woman toWeb3.1 CGHregions [30] As mentioned before (Section 2), this method is designed to capture patterns such as those in Scenario V of Figure 1, and has therefore been considered a dimension reduction ... elizabeth blackwell was born 阅读理解WebCGHregions_1.57.0.zip: macOS Binary (x86_64) CGHregions_1.57.0.tgz: macOS Binary (arm64) CGHregions_1.57.0.tgz: Source Repository: git clone … force based design คือWebFeb 8, 2007 · The algorithm, named CGHregions, is available as an easy-to-use script in R. Keywords: Array CGH, Dimension reduction, Tumor profiles, Statistical testing, FDR Introduction Array Comparative Genomic Hybridization (array CGH) is an increasingly popular high-resolution technique to discover at which chromosomal locations the DNA is … force barcaWebDOI: 10.18129/B9.bioc.CGHregions This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see CGHregions. Dimension Reduction for Array CGH Data with Minimal Information Loss. Bioconductor version: 3.12 Dimension Reduction for Array CGH Data with Minimal Information Loss force barsWebThe algorithm, named CGHregions, is available as an easy-to-use script in R. Keywords: Array CGH; Dimension reduction; Tumor profiles; Statistical testing; FDR. elizabeth blackwell who is she